Package: MALDIrppa 1.1.0-3

MALDIrppa: MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis

Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data (Palarea-Albaladejo et al. (2018) <doi:10.1093/bioinformatics/btx628>).

Authors:Javier Palarea-Albaladejo [cre, aut], Paolo Ribeca [ctb]

MALDIrppa_1.1.0-3.tar.gz
MALDIrppa_1.1.0-3.zip(r-4.7)MALDIrppa_1.1.0-3.zip(r-4.6)MALDIrppa_1.1.0-3.zip(r-4.5)
MALDIrppa_1.1.0-3.tgz(r-4.6-any)MALDIrppa_1.1.0-3.tgz(r-4.5-any)
MALDIrppa_1.1.0-3.tar.gz(r-4.7-any)MALDIrppa_1.1.0-3.tar.gz(r-4.6-any)
MALDIrppa_1.1.0-3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MALDIrppa/json (API)

# Install 'MALDIrppa' in R:
install.packages('MALDIrppa', repos = c('https://japal.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/japal/maldirppa/issues

Datasets:
  • spectra - Example mass spectra profiles
  • type - Example mass spectra metadata

On CRAN:

Conda:

mass-spectrometrypre-processing

6.31 score 3 stars 1 packages 38 scripts 340 downloads 3 mentions 20 exports 8 dependencies

Last updated from:b740d1fd44. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK139
source / vignettesOK189
linux-release-x86_64OK371
macos-release-arm64OK139
macos-oldrel-arm64OK97
windows-develOK108
windows-releaseOK107
windows-oldrelOK113
wasm-releaseOK111

Exports:addMetadataalignPeakscountPeaksdeletePeaksdetectOutliersimportSpectrapeakPatternsplot.scSpectrarawToPeaksrawToSpectraredResolutionscreenSpectrasnrPeakssummary.scSpectrasummaryPeakssummarySpectratransfIntensitywavSmoothingwriteIntensitywriteMetadata

Dependencies:DEoptimRlatticeMALDIquantMASSmultitaperrobustbasesignalwaveslim

Robust MALDI mass spectra data pre-processing pipeline with MALDIrppa (up to v1.0.5-1)
Introduction | Getting started | Initial screening | Parameter settings | Denoising, baseline correction and normalisation | Peak extraction and alignment | Outliers, filtering and merging replicates | References
Rendered fromMALDIrppa_vignette_v105.Rmdusingknitr::rmarkdown

Last update: 2022-02-10
Started: 2022-02-10

Robust MALDI mass spectra data pre-processing pipeline with MALDIrppa v1.1.0
Introduction | Getting started | Initial screening | Parameter settings | Denoising, baseline correction and normalisation | Peak extraction and alignment | Outliers, filtering and merging replicates | References
Rendered fromMALDIrppa_vignette_v110.Rmdusingknitr::rmarkdown

Last update: 2022-02-10
Started: 2022-02-10