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  "Title": "MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis",
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  "Maintainer": "Javier Palarea-Albaladejo <javier.palarea@udg.edu>",
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  "Description": "Provides methods for quality control and robust\npre-processing and analysis of MALDI mass spectrometry data\n(Palarea-Albaladejo et al. (2018)\n<doi:10.1093/bioinformatics/btx628>).",
  "License": "GPL (>= 2)",
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  "URL": "https://github.com/Japal/MALDIrppa",
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    "deletePeaks",
    "detectOutliers",
    "importSpectra",
    "peakPatterns",
    "plot.scSpectra",
    "rawToPeaks",
    "rawToSpectra",
    "redResolution",
    "screenSpectra",
    "snrPeaks",
    "summary.scSpectra",
    "summaryPeaks",
    "summarySpectra",
    "transfIntensity",
    "wavSmoothing",
    "writeIntensity",
    "writeMetadata"
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      "title": "Example mass spectra profiles",
      "object": "spectra",
      "file": "spectra.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "type",
      "title": "Example mass spectra metadata",
      "object": "type",
      "file": "type.rda",
      "class": [
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      ],
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        "Isolate",
        "BioRep",
        "TechRep",
        "SpectID"
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      "table": true,
      "tojson": true
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      "page": "MALDIrppa-package",
      "title": "MALDI mass spectra robust pre-processing and analysis",
      "topics": [
        "MALDIrppa-package",
        "MALDIrppa"
      ]
    },
    {
      "page": "addMetadata",
      "title": "Add metadata to 'AbstractMassObject' class objects",
      "topics": [
        "addMetadata"
      ]
    },
    {
      "page": "alignPeaks",
      "title": "Compact peak alignment process for 'MassPeaks' objects",
      "topics": [
        "alignPeaks"
      ]
    },
    {
      "page": "countPeaks",
      "title": "Count the number of peaks in 'MassPeaks' objects",
      "topics": [
        "countPeaks"
      ]
    },
    {
      "page": "deletePeaks",
      "title": "Delete peaks from a 'MassPeaks' objects",
      "topics": [
        "deletePeaks"
      ]
    },
    {
      "page": "detectOutliers",
      "title": "Detection of outlying mass peak profiles",
      "topics": [
        "detectOutliers"
      ]
    },
    {
      "page": "importSpectra",
      "title": "Convert mass spectra from text files into 'MassSpectrum' objects",
      "topics": [
        "importSpectra"
      ]
    },
    {
      "page": "peakPatterns",
      "title": "Display peak presence/absence patterns",
      "topics": [
        "peakPatterns"
      ]
    },
    {
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      "title": "Graphical summary of 'screenSpectra' objects",
      "topics": [
        "plot.scSpectra"
      ]
    },
    {
      "page": "rawToPeaks",
      "title": "Create list of 'MassPeaks' objects",
      "topics": [
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      ]
    },
    {
      "page": "rawToSpectra",
      "title": "Create list of 'MassSpectrum' objects",
      "topics": [
        "rawToSpectra"
      ]
    },
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    },
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      "topics": [
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      ]
    },
    {
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      "title": "Extract signal-to-noise ratio thresholds from 'MassPeaks' objects",
      "topics": [
        "snrPeaks"
      ]
    },
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      "page": "spectra",
      "title": "Example mass spectra profiles",
      "topics": [
        "spectra"
      ]
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    {
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      "topics": [
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    },
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      "title": "Example mass spectra metadata",
      "topics": [
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    {
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      "title": "Discrete wavelet transformation for 'MassSpectrum' objects",
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